Testbed

Basic formatting

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.

External link

Internal link

italic text

bold text

strike-through text

Text with extra blank lines above and below

• list item a
• list item b
• list item c

1. ordered list item 1
2. ordered list item 2
3. ordered list item 3

1. top level list item
   • nested list item
     1. even deeper nested list item

Plain image:

Heading 1

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

Heading 2

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

Heading 3

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

Heading 4

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

Heading 5

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

Heading 6

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

It was the best of times it was the worst of times. It was the age of wisdom, it was the age of foolishness. It was the spring of hope, it was the winter of despair.

// some code with syntax highlighting
const popup = document.querySelector("#popup");
popup.style.width = "100%";
popup.innerText =
  "Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.";

This sentence has inline code, useful for making references to variables, packages, versions, etc. within a sentence.

Lorem ipsum dolor sit amet.

Consectetur adipiscing elit.

Sed do eiusmod tempor incididunt.

Jekyll Spaceship

$ a * b = c ^ b $

$ 2^{\frac{n-1}{3}} $

$ \int_a^b f(x)\,dx. $

Components

Section

Section, background

Section, dark=true

Section, background dark=true

Section, size=wide

Section, size=full w/ figure

Figure

Button

Icon

Lorem Ipsum Dolor

Feature

Title

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

Title

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

List

List citations

2024

2023

2022

2021

2020

2018

List projects

Cool Dataset a subtitle

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

resource

Cool Package a subtitle

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

resource

Cool Tutorial a subtitle

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

resource publication

Cool Web App a subtitle

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

software

Cool Web Server a subtitle

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

software

List team members

Anna Nemudraia, PhD Research Assistant Professor

Artem Nemudryi, PhD Principal Investigator

Kumar, Nikhil Undergraduate Student

Riley Cassidy Undergraduate Student,
COM University Scholar

Samuel Schweitzer Undergraduate Student

Veronica Perez Taboada Rotation PhD Student

Yimo 'Mr. Buffer' Wu Undergraduate Student,
COM University Scholar

List blog posts

2023

Example post 3

john-doe February 23, 2023 April 18, 2025

biology medicine

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

2021

2019

Citation

[no title info]

[no publisher info]  ·  [no date info]  ·  [no id info]

Card

A Large Card A cool card

A cool description

manual tag

A Small Card A cool card

Lorem ipsum

manual tag

Portrait

Manual name

Post Excerpt

Alert

Tags

Float

Figures

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.

Code

const test = "Lorem ipsum dolor sit amet, consectetur adipiscing elit.";

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Nulla facilisi etiam dignissim diam quis. Id aliquet lectus proin nibh nisl condimentum id venenatis a. Tristique magna sit amet purus gravida quis blandit turpis cursus. Ultrices eros in cursus turpis massa tincidunt dui ut ornare. A cras semper auctor neque vitae tempus quam pellentesque nec. At tellus at urna condimentum mattis pellentesque. Ipsum consequat nisl vel pretium. Ultrices mi tempus imperdiet nulla malesuada pellentesque elit eget gravida. Integer vitae justo eget magna fermentum iaculis eu non diam. Mus mauris vitae ultricies leo integer malesuada nunc vel. Leo integer malesuada nunc vel risus. Ornare arcu odio ut sem nulla pharetra. Purus semper eget duis at tellus at urna condimentum. Enim neque volutpat ac tincidunt vitae semper quis lectus.

Grid

Regular

With Markdown images

Square

With figure components

Grid of citations

2024

Repair of CRISPR-guided RNA breaks enables site-specific RNA excision in human cells

Anna Nemudraia, Artem Nemudryi, Blake Wiedenheft

Science  ·  17 May 2024  ·  doi:10.1126/science.adk5518

Genome Engineering Seminar Series, Harvard Medical School

A CRISPR Tool for Tinkering with the Human Transcriptome, The Scientist

The Diverse Evolutionary Histories of Domesticated Metaviral Capsid Genes in Mammals

William S Henriques, Janet M Young, Artem Nemudryi, Anna Nemudraia, Blake Wiedenheft, Harmit S Malik

Molecular Biology and Evolution  ·  20 Mar 2024  ·  10.1093/molbev/msae061

2023

CRISPR-based engineering of RNA viruses

Artem Nemudryi, Anna Nemudraia, Joseph E. Nichols, Andrew M. Scherffius, Trevor Zahl, Blake Wiedenheft

Science Advances  ·  15 Sep 2023  ·  doi:10.1126/sciadv.adj8277

CRISPR-Based Editing of RNA Viruses Developed, Inside Precision Medicine

RNA editing set to democratise viral engineering, Chemistry World

Discussion on TWiV 1045 (from 34:11)

Repair of CRISPR-guided RNA breaks enables site-specific RNA editing in human cells

Anna Nemudraia, Artem Nemudryi, Blake Wiedenheft

bioRxiv  ·  29 Aug 2023  ·  doi:10.1101/2023.08.29.555404

Polyamines and linear DNA mediate bacterial threat assessment of bacteriophage infection

Camilla D. de Mattos, Dominick R. Faith, Artem A. Nemudryi, Amelia K. Schmidt, DeAnna C. Bublitz, …, Jumpei Uchiyama, Laura K. Jennings, Prahathees Eswara, Blake Wiedenheft, Patrick R. Secor

Proceedings of the National Academy of Sciences  ·  21 Feb 2023  ·  doi:10.1073/pnas.2216430120

2022

Sequence-specific capture and concentration of viral RNA by type III CRISPR system enhances diagnostic

Anna Nemudraia, Artem Nemudryi, Murat Buyukyoruk, Andrew M. Scherffius, Trevor Zahl, …, Laura R. Snyder, Joshua D. Jones, Kristin S. Koutmou, Andrew Santiago-Frangos, Blake Wiedenheft

Nature Communications  ·  15 Dec 2022  ·  doi:10.1038/s41467-022-35445-5

A viral “codebreaker” intercepts a host alarm

Artem Nemudryi, Anna Nemudraia, Tanner Wiegand, Samuel H. Sternberg, Blake Wiedenheft

Cell Host & Microbe  ·  01 Dec 2022  ·  doi:10.1016/j.chom.2022.11.005

The Rise and Fall of SARS-CoV-2 Variants and Ongoing Diversification of Omicron

Tanner Wiegand, Artem Nemudryi, Anna Nemudraia, Aidan McVey, Agusta Little, David N. Taylor, Seth T. Walk, Blake Wiedenheft

Viruses  ·  10 Sep 2022  ·  doi:10.3390/v14092009

CRISPR-Cas, Argonaute proteins and the emerging landscape of amplification-free diagnostics

Andrew Santiago-Frangos, Artem Nemudryi, Anna Nemudraia, Tanner Wiegand, Joseph E. Nichols, Pushya Krishna, Andrew M. Scherffius, Trevor R. Zahl, Royce A. Wilkinson, Blake Wiedenheft

Methods  ·  01 Sep 2022  ·  doi:10.1016/j.ymeth.2022.06.002

Severe Acute Respiratory Syndrome Coronavirus 2 Is Detected in the Gastrointestinal Tract of Asymptomatic Endoscopy Patients but Is Unlikely to Pose a Significant Risk to Healthcare Personnel

Michelle D. Cherne, Andrew B. Gentry, Anna Nemudraia, Artem Nemudryi, Jodi F. Hedges, …, David B. King, Raina K. Plowright, Mark A. Jutila, Blake Wiedenheft, Diane Bimczok

Gastro Hep Advances  ·  01 Jan 2022  ·  10.1016/j.gastha.2022.06.002

2021

SARS-CoV-2 genomic surveillance identifies naturally occurring truncation of ORF7a that limits immune suppression

Artem Nemudryi, Anna Nemudraia, Tanner Wiegand, Joseph Nichols, Deann T. Snyder, …, Helen Lee, Karl K. Vanderwood, Diane Bimczok, Mark A. Jutila, Blake Wiedenheft

Cell Reports  ·  01 Jun 2021  ·  doi:10.1016/j.celrep.2021.109197

MSU researchers publish study on coronavirus variant, MSU News Service

Intrinsic signal amplification by type III CRISPR-Cas systems provides a sequence-specific SARS-CoV-2 diagnostic

Andrew Santiago-Frangos, Laina N. Hall, Anna Nemudraia, Artem Nemudryi, Pushya Krishna, …, Helen H. Lee, Ava Graham, Mark A. Jutila, Matthew P. Taylor, Blake Wiedenheft

Cell Reports Medicine  ·  01 Jun 2021  ·  doi:10.1016/j.xcrm.2021.100319

2020

Temporal Detection and Phylogenetic Assessment of SARS-CoV-2 in Municipal Wastewater

Artem Nemudryi, Anna Nemudraia, Tanner Wiegand, Kevin Surya, Murat Buyukyoruk, Calvin Cicha, Karl K. Vanderwood, Royce Wilkinson, Blake Wiedenheft

Cell Reports Medicine  ·  01 Sep 2020  ·  doi:10.1016/j.xcrm.2020.100098

Sewers Are Now a COVID-19 Early-Warning System, The Atlantic

2018

CRISPR RNA-guided autonomous delivery of Cas9

Royce A. Wilkinson, Coleman Martin, Artem A. Nemudryi, Blake Wiedenheft

Nature Structural & Molecular Biology  ·  31 Dec 2018  ·  doi:10.1038/s41594-018-0173-y

Grid of blog posts

2023

Example post 3

john-doe February 23, 2023 April 18, 2025

biology medicine

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

2021

Example post 2

jane-smith September 30, 2021 April 18, 2025

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

2019

Example post 1

sarah-johnson January 07, 2019 April 18, 2025

biology medicine big data

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

Cols

Text

Images

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

Code

const test = "Lorem ipsum dolor sit amet";

const test = "Lorem ipsum dolor sit amet";

const test = "Lorem ipsum dolor sit amet";

Search

Site Search